Key: Win : Draw : Loss
| Date | Home | Away | Ref | ||
|---|---|---|---|---|---|
| 03/08/2013 | York | 1 | 0 | Northampton | C Breakspear |
| 10/08/2013 | Northampton | 3 | 1 | Newport County | M Heywood |
| 17/08/2013 | Southend | 2 | 0 | Northampton | A Davies |
| 24/08/2013 | Northampton | 1 | 2 | Torquay | A Madley |
| 31/08/2013 | Bristol Rvs | 1 | 0 | Northampton | M Haywood |
| 07/09/2013 | Northampton | 1 | 1 | Scunthorpe | S Stockbridge |
| 14/09/2013 | Northampton | 1 | 2 | Exeter | R Lewis |
| 21/09/2013 | Mansfield | 3 | 0 | Northampton | S Rushton |
| 28/09/2013 | Northampton | 0 | 0 | Morecambe | D Sheldrake |
| 05/10/2013 | AFC Wimbledon | 0 | 2 | Northampton | A D'Urso |
| 12/10/2013 | Oxford | 2 | 0 | Northampton | D Deadman |
| 19/10/2013 | Northampton | 2 | 2 | Dag and Red | T Harrington |
| 22/10/2013 | Rochdale | 3 | 2 | Northampton | M Naylor |
| 26/10/2013 | Northampton | 1 | 1 | Cheltenham | M Atkinson |
| 02/11/2013 | Plymouth | 1 | 0 | Northampton | T Kettle |
| 16/11/2013 | Northampton | 1 | 0 | Fleetwood Town | G Sutton |
| 23/11/2013 | Hartlepool | 2 | 0 | Northampton | M Haywood |
| 26/11/2013 | Chesterfield | 0 | 0 | Northampton | D Drysdale |
| 30/11/2013 | Northampton | 1 | 0 | Accrington | D Phillips |
| 14/12/2013 | Bury | 1 | 1 | Northampton | N Miller |
| 21/12/2013 | Northampton | 1 | 4 | Wycombe | S Hooper |
| 26/12/2013 | Burton | 1 | 0 | Northampton | J Adcock |
| 29/12/2013 | Portsmouth | 0 | 0 | Northampton | G Ward |
| 04/01/2014 | Newport County | 1 | 2 | Northampton | F Graham |
| 11/01/2014 | Northampton | 0 | 2 | York | G Scott |
| 25/01/2014 | Northampton | 1 | 3 | Chesterfield | G Horwood |
| 01/02/2014 | Cheltenham | 1 | 1 | Northampton | P Tierney |
| 08/02/2014 | Northampton | 0 | 2 | Plymouth | N Miller |
| 11/02/2014 | Torquay | 1 | 2 | Northampton | C Sarginson |
| 15/02/2014 | Fleetwood Town | 2 | 0 | Northampton | R Clark |
| 22/02/2014 | Northampton | 2 | 0 | Hartlepool | D Bond |
| 25/02/2014 | Northampton | 2 | 1 | Southend | C Boyeson |
| 01/03/2014 | Northampton | 0 | 0 | Bristol Rvs | M Russell |
| 08/03/2014 | Scunthorpe | 1 | 1 | Northampton | K Wright |
| 11/03/2014 | Exeter | 0 | 1 | Northampton | S Bratt |
| 15/03/2014 | Northampton | 1 | 1 | Mansfield | A Haines |
| 18/03/2014 | Northampton | 0 | 3 | Rochdale | M Heywood |
| 22/03/2014 | Morecambe | 1 | 1 | Northampton | C Sarginson |
| 25/03/2014 | Northampton | 2 | 2 | AFC Wimbledon | M Bull |
| 29/03/2014 | Northampton | 0 | 3 | Bury | S Martin |
| 05/04/2014 | Accrington | 0 | 1 | Northampton | F Graham |
| 12/04/2014 | Northampton | 1 | 0 | Burton | C Berry |
| 18/04/2014 | Wycombe | 1 | 1 | Northampton | A D'Urso |
| 21/04/2014 | Northampton | 0 | 1 | Portsmouth | D Deadman |
| 26/04/2014 | Dag and Red | 0 | 3 | Northampton | S Mathieson |
| 03/05/2014 | Northampton | 3 | 1 | Oxford | S Duncan |