Key: Win : Draw : Loss
| Date | Home | Away | Ref | ||
|---|---|---|---|---|---|
| 06/08/2011 | Gillingham | 1 | 0 | Cheltenham | L Collins |
| 13/08/2011 | Crewe | 1 | 2 | Gillingham | P Gibbs |
| 16/08/2011 | Barnet | 2 | 2 | Gillingham | J Linington |
| 20/08/2011 | Gillingham | 3 | 0 | Plymouth | R Lewis |
| 27/08/2011 | Rotherham | 3 | 0 | Gillingham | J Adcock |
| 03/09/2011 | Gillingham | 0 | 1 | Shrewsbury | F Graham |
| 10/09/2011 | Gillingham | 1 | 1 | Accrington | D Sheldrake |
| 13/09/2011 | Southend | 1 | 0 | Gillingham | D Phillips |
| 17/09/2011 | Hereford | 1 | 6 | Gillingham | P Tierney |
| 24/09/2011 | Gillingham | 3 | 1 | Burton | G Sutton |
| 01/10/2011 | AFC Wimbledon | 3 | 1 | Gillingham | M Naylor |
| 08/10/2011 | Gillingham | 1 | 1 | Port Vale | S Hooper |
| 15/10/2011 | Torquay | 2 | 5 | Gillingham | O Langford |
| 22/10/2011 | Gillingham | 1 | 0 | Oxford | G Ward |
| 25/10/2011 | Swindon | 2 | 0 | Gillingham | D Coote |
| 29/10/2011 | Morecambe | 2 | 1 | Gillingham | C Boyeson |
| 05/11/2011 | Gillingham | 4 | 3 | Northampton | C Berry |
| 19/11/2011 | Aldershot | 1 | 2 | Gillingham | D Mohareb |
| 26/11/2011 | Gillingham | 0 | 0 | Bradford | I Williamson |
| 10/12/2011 | Macclesfield | 0 | 0 | Gillingham | G Salisbury |
| 17/12/2011 | Gillingham | 4 | 1 | Bristol Rvs | O Langford |
| 26/12/2011 | Crawley Town | 1 | 2 | Gillingham | D Sheldrake |
| 30/12/2011 | Dag and Red | 2 | 1 | Gillingham | P Miller |
| 02/01/2012 | Gillingham | 1 | 0 | Aldershot | C Sarginson |
| 14/01/2012 | Shrewsbury | 2 | 0 | Gillingham | C Boyeson |
| 21/01/2012 | Gillingham | 3 | 4 | AFC Wimbledon | B Malone |
| 28/01/2012 | Accrington | 4 | 3 | Gillingham | S Rushton |
| 13/02/2012 | Gillingham | 1 | 2 | Southend | R East |
| 18/02/2012 | Port Vale | 2 | 1 | Gillingham | D Drysdale |
| 21/02/2012 | Gillingham | 0 | 0 | Rotherham | A Woolmer |
| 25/02/2012 | Gillingham | 2 | 0 | Torquay | J Waugh |
| 28/02/2012 | Gillingham | 5 | 4 | Hereford | D Phillips |
| 03/03/2012 | Plymouth | 0 | 1 | Gillingham | M Brown |
| 06/03/2012 | Gillingham | 3 | 1 | Barnet | C Berry |
| 10/03/2012 | Gillingham | 3 | 4 | Crewe | K Stroud |
| 17/03/2012 | Cheltenham | 0 | 3 | Gillingham | A Madley |
| 20/03/2012 | Gillingham | 0 | 1 | Crawley Town | M Heywood |
| 24/03/2012 | Bradford | 2 | 2 | Gillingham | S Mathieson |
| 27/03/2012 | Burton | 1 | 0 | Gillingham | D Webb |
| 31/03/2012 | Gillingham | 2 | 0 | Macclesfield | D McDermid |
| 06/04/2012 | Bristol Rvs | 2 | 2 | Gillingham | D Whitestone |
| 09/04/2012 | Gillingham | 1 | 2 | Dag and Red | I Williamson |
| 14/04/2012 | Oxford | 0 | 0 | Gillingham | D Coote |
| 21/04/2012 | Gillingham | 3 | 1 | Swindon | S Rushton |
| 28/04/2012 | Northampton | 1 | 1 | Gillingham | K Stroud |
| 05/05/2012 | Gillingham | 2 | 0 | Morecambe | G Sutton |